rs32664644 SNP Detail

Summary

• ID
  rs32664644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63778409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACTCTTCA AAGCCAGTGG CTTGTGAGGA AGCTTTCGAT
  TTCTTTTGTG GGTTTTAACA TTGAAATAGC AGAGCTCTGG GAAGACTTGG CCTCTCTCTC
  Y
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCC CTCTCCCTCT CTCTCTCCCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45677455	mCV24477426	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32664644					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63778409 () rs orientation: forward

Symbol	Name	Function Class
Rr593618	regulatory region 593618	4 bp distal
Rr593619	regulatory region 593619	128 bp proximal
Rr593620	regulatory region 593620	1165 bp proximal
Rr593621	regulatory region 593621	1999 bp proximal
Tnfsf8	tumor necrosis factor (ligand) superfamily, member 8	Intron
Tssr42075	transcription start site region 42075	720 bp downstream
Tssr42076	transcription start site region 42076	751 bp downstream
Tssr42077	transcription start site region 42077	857 bp downstream
Tssr42078	transcription start site region 42078	928 bp downstream
Tssr42079	transcription start site region 42079	1106 bp downstream
Tssr42080	transcription start site region 42080	1124 bp downstream
Tssr42081	transcription start site region 42081	1154 bp downstream