rs32664226 SNP Detail

Summary

• ID
  rs32664226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150172686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG CTGTGGCATT CGTGCTTTCC
  Y
  TATCTAGGTG TCAAGGTGGT GTGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46711494	NES11007489	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	C	T	T	C		C	C	T	C		T
ss148046921	ENSMUSSNP5442621	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
ss321428026	CHEV_4_149462338	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32664226					SNP	C	C	T	C	T	T	C	T	T	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711494	NES11007489	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150172686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15345	CpG island 15345	within coordinates
Gpr157	G protein-coupled receptor 157	Intron
Rr398878	regulatory region 398878	797 bp downstream
Rr605172	regulatory region 605172	854 bp distal
Rr605173	regulatory region 605173	495 bp distal
Rr605174	regulatory region 605174	159 bp distal
Rr605175	regulatory region 605175	828 bp proximal
Tssr40369	transcription start site region 40369	688 bp downstream
Tssr40370	transcription start site region 40370	560 bp downstream