rs32663427 SNP Detail

Summary

• ID
  rs32663427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152516555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACAAAAA TCTGAATTGT
  TTACTGTGAC AGCTTTTTTA TCCTAGCTGT CAATGGTCCT GAGCCACACC AGCTGGGAGG
  GGGAACCACA AACCTCCTCA GTGCAAAACA GCTTTCCAGA TGTTTTCCAT GGCGTTACAG
  AAGTTCAGGG TTGGCTGTAG TATGCAGTCC TTTATGCCTC TCTGTACCTG GGACCCTCCA
  Y
  GTGTAATGGC TGATGCAGAC TGCCAACGTT CCTGAGTTAA GAACGACGCC TGGAGCATTC
  CATTCTTAGG CACATGAGGC AAGTGGGAGG TCATTTATCC ACCTTGGAGT GGGTGATGGC
  GTCATCCTGC GAGCTAAGGT CTCAGCCTGA AAACTGCAGC CCTGGCGCCC CCCACTCTGC
  TTCCATCCAG ACGGGAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45677991	mCV23464179	ABI	CRAMUS_MOUSE	f	SNP		T	C						C
ss46739385	NES10999731	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C	C	C	C
ss148082260	ENSMUSSNP7016652	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32663427					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46739385	NES10999731	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152516555 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605873	regulatory region 605873			288 bp proximal
Rr605874	regulatory region 605874			370 bp proximal
Rr605875	regulatory region 605875			417 bp proximal