rs32663139 SNP Detail

Summary

• ID
  rs32663139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150205316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT TCTTGCTCAG GTATTGCAGA
  R
  CCTGCCCTGG GCGGCGGGAT GCGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46711938	NES11005856	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	A	G	A	A	A	A
ss148048047	ENSMUSSNP1868456	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32663139					SNP	G	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711938	NES11005856	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150205316 () rs orientation: forward

Symbol	Name	Function Class
Gm13093	predicted gene 13093	1596 bp upstream
Rr605186	regulatory region 605186	1607 bp distal
Rr605187	regulatory region 605187	1566 bp distal
Rr605188	regulatory region 605188	1367 bp distal
Rr605189	regulatory region 605189	within coordinates
Rr605190	regulatory region 605190	1234 bp proximal
Slc2a5	solute carrier family 2 (facilitated glucose transporter), member 5	Intron
Tssr40372	transcription start site region 40372	1528 bp downstream
Tssr40373	transcription start site region 40373	1510 bp downstream
Tssr40374	transcription start site region 40374	154 bp downstream