rs32663090 SNP Detail

Summary

• ID
  rs32663090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136036898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AACACCGGTG GGATAATTTA TACAGAAGAG GGTTTTTATC TGATCTTGTG TTTGCTTATG
  TGTGTGTGGA GGGAGGTGCA GACGAAGGTC AGAGGAAGAA AGTGAGTGTC CTGCTCTTCC
  ACCCTCCGCC CTGGAGCTAA ACTGGCAGCA AGCTACAGCA ATTCTCCGGT TGCAGTCTAC
  ATCAGCACTG GAGTTTACAG GTGCATGCGG TCACGCCAGG CTTTTTACTC AAGTGGATGG
  AGATTCACAG TCAGGTTTTT TTTTGTGGGG GGGCGGGGTT TCGAGACAGG GTTTCTCTGT
  R
  TAGCCCTGGC TGTCCTGGAA CTCACTCTGT AGACCAGGCT GGCCTGGAAC TCAGAAATCC
  GCCTGACTGC CTCCCGAGTG CTGGGATTAA AGGCATGCGC CACCACTGCC GGGCCACAGT
  CAGGATTTTA AACTTGCATT TGAGCCGTCT CTCCAGCCCC TAGGACAGGC TTTACAATTT
  ACAGTTCTGG AAGCAGGGAA GTCCAACATT GAGAGCACGC GGGGATAAGG GCCGTCTCCC
  TACGCTGGAA GCGCAAAAGA TGCAGAGAAG ATCTAGAGTC AGGCATCAAA CTCACAGCCT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45677348	mCV22562765	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss147565103	ENSMUSSNP7107063	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs32663090					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136036898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15109	CpG island 15109	697 bp proximal
Gm13013	predicted gene 13013	1701 bp upstream
Hnrnpr	heterogeneous nuclear ribonucleoprotein R	1355 bp upstream
Rr367756	regulatory region 367756	within coordinates
Rr602347	regulatory region 602347	865 bp proximal
Rr602348	regulatory region 602348	1449 bp proximal
Tssr39700	transcription start site region 39700	1349 bp upstream
Tssr39701	transcription start site region 39701	1365 bp upstream
Tssr39702	transcription start site region 39702	1404 bp upstream