rs32662309 SNP Detail

Summary

• ID
  rs32662309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150203305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATAAAAATG AATCCCAAAG CTTAGATACA GCGGTGGATT
  TCCTGCCGCA TTCAGAAGCC ACAGAAGCAA GGGCGAGATG GCCAGGGAAG GCTCAGCAGG
  Y
  CGGATCCATC TGGGAGGTCT GAAAACCAAG AGGATCCATC CACACACTTT CAAACCAGAT
  GCACCCAGGG TACTGTGTTC CTAAGAGTGC CCACTGCCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46711923	NES11005851	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32662309					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711923	NES11005851	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150203305 () rs orientation: forward

Symbol	Name	Function Class
Gm13093	predicted gene 13093	within coordinates
Rr605185	regulatory region 605185	1208 bp distal
Rr605186	regulatory region 605186	155 bp proximal
Rr605187	regulatory region 605187	405 bp proximal
Rr605188	regulatory region 605188	446 bp proximal
Rr605189	regulatory region 605189	805 bp proximal
Slc2a5	solute carrier family 2 (facilitated glucose transporter), member 5	496 bp upstream
Tssr40372	transcription start site region 40372	427 bp upstream
Tssr40373	transcription start site region 40373	490 bp upstream
Tssr40374	transcription start site region 40374	1838 bp upstream