rs32661570 SNP Detail

Summary

• ID
  rs32661570
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150134463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATT AGGATGTGAG AGAAAACAAC
  K
  TGTCAGGCAA GCAGCACGTG TTGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46711014	NES11008639	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	T	G	G	G		G	T	G	T		G
ss321427749	CHEV_4_149424115	CHEVERUD	SCREENING_POP	f	SNP									T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32661570					SNP	G	T	G	G	T	G	G	G	T	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711014	NES11008639	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150134463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	685 bp distal
Gm13067	predicted gene 13067	within coordinates
Gm69230	predicted gene, 69230	893 bp upstream
Rr377414	regulatory region 377414	within coordinates
Rr605155	regulatory region 605155	1757 bp distal
Rr605156	regulatory region 605156	992 bp distal
Rr605157	regulatory region 605157	403 bp distal
Rr605158	regulatory region 605158	1751 bp proximal
Tssr40363	transcription start site region 40363	1762 bp downstream
Tssr40364	transcription start site region 40364	1714 bp downstream
Tssr40365	transcription start site region 40365	815 bp downstream