rs32661567 SNP Detail

Summary

• ID
  rs32661567
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150133738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCAGCCTG GAGGAGGATC
  GAGCAGGGGC TGTGCCTGGG CTTGCCTGGA CTTGTTCAGA GAAGGGCTGC TCCCCTCGGT
  AACTGCACAG ATTGGGGGCT TTGGGAGACG TTGCCAGAAC CTGGAAGCCA CGGCCGGGGG
  CTACTGGGGC CCGGGGTCTG CGCACCTGCT CGCCGTGGAG CCCAGGTAAA CACTGAGCCG
  R
  TGTGCTTGTC TGTGGGAAAG TGTGCGAAGG AGTCGGGAAC TAGGCCGAGT ACTTGAGTGG
  TAATTACAGA GAACTGCTGG GTTGTGCAGC CCTGGGAAGG CGAAGAATTT CCAAGAAGTA
  ACAAAATGTC CTTTGATATC ATCATCTCTG GAGAGAAAGG GTTCCTTTGG GGGAGTTTTG
  CTTGGGCCGA TTTTTTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45682935	mCV23448480	ABI	CRAMUS_MOUSE	f	SNP	A	A	G						G
ss46711011	NES11008638	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	G	G	G	G	G	G	G	G	G	G	G
ss148045906	ENSMUSSNP4565702	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32661567					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711011	NES11008638	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150133738 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	within coordinates
Gm13067	predicted gene 13067	within coordinates
Gm69230	predicted gene, 69230	168 bp upstream
Rr377414	regulatory region 377414	within coordinates
Rr605155	regulatory region 605155	1032 bp distal
Rr605156	regulatory region 605156	267 bp distal
Rr605157	regulatory region 605157	within coordinates
Tssr40363	transcription start site region 40363	1037 bp downstream
Tssr40364	transcription start site region 40364	989 bp downstream
Tssr40365	transcription start site region 40365	90 bp downstream