rs32661516 SNP Detail

Summary

• ID
  rs32661516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150173789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCGTCCGCC CTAATTATAG GTCCCTTCTA TTAAAAACTT
  GAATGCTTTC CAAGGGCCGA GCGGGTAGTC AGCACTTTGG TAGAGACAGG TCACCTGGGT
  R
  TCACACGCAG AGGCCACAAG CTGGGAAGAG TCACTTGACC TCCTGTTCTT GTAGCTGTTG
  GAAGGAGACC AGCCGGTCCT AAAGAAACGA AAGAGCCCTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46711521	NES11007456	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32661516					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711521	NES11007456	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150173789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15345	CpG island 15345	831 bp distal
Gpr157	G protein-coupled receptor 157	Intron
Rr398878	regulatory region 398878	1900 bp downstream
Rr605172	regulatory region 605172	1957 bp distal
Rr605173	regulatory region 605173	1598 bp distal
Rr605174	regulatory region 605174	1262 bp distal
Rr605175	regulatory region 605175	within coordinates
Tssr40369	transcription start site region 40369	1791 bp downstream
Tssr40370	transcription start site region 40370	1663 bp downstream