rs32660507 SNP Detail

Summary

• ID
  rs32660507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150132521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTGCAGC TGATGAAGGG
  ATTTCTGACA TATAACTAAC CACCCAGGAC GGAGACATAG AGCCTGTGTC ACAATGGAGC
  CGAGGGCAGT TTGTCTCTGG AGCATCCTGG CTGAGCCGGA GATCCATACT AGCAGGGGAC
  ATAATCATAG GTGGAGTCCC CTTTCCCACA GGGCAAGGTG GTCTTCAGGG CTGTGCACAC
  Y
  GAGCCTCTCT ACTAACCCAC AAGGGGGTCC TGTGCCGGCT GCCCTGGATA GAGAAGAAAG
  CGTGAGAAAT GGGAGGCGCG TGCCTGGCTC GCTGCCCAGG CTCCTCCCTG CAGCTCTCTG
  CTCGGTACTT CAGTCTAAGT TTGTACAAAA GCCCTGCCCC ACTCGAGGTC TCTTGCCCTG
  CGCTCCCGGC TCAAGAGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45690397	mCV23448453	ABI	CRAMUS_MOUSE	f	SNP		T	C					C	C
ss46710999	NES11008634	PERLEGEN	MM_PANEL2	f	SNP	T			C	C	C	C		C	C	C	C	C	C	C	C
ss148045850	ENSMUSSNP5569715	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32660507					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46710999	NES11008634	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150132521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	35 bp proximal
Gm13067	predicted gene 13067	131 bp upstream
Gm69230	predicted gene, 69230	within coordinates
Rr377414	regulatory region 377414	265 bp upstream
Rr605155	regulatory region 605155	within coordinates
Rr605156	regulatory region 605156	450 bp proximal
Rr605157	regulatory region 605157	1039 bp proximal
Tssr40363	transcription start site region 40363	127 bp upstream
Tssr40364	transcription start site region 40364	214 bp upstream
Tssr40365	transcription start site region 40365	1109 bp upstream