rs32659934 SNP Detail

Summary

• ID
  rs32659934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143027648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAG ACCTTTTGGG GAAATGCTAG
  Y
  TAAACCCAGT GTCCATGGAA AGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45676763	mCV25432289	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss147779137	ENSMUSSNP698808	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss321403831	CHEV_4_142890981	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32659934					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143027648 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	1514 bp upstream
Rr604190	regulatory region 604190	1626 bp distal
Rr604191	regulatory region 604191	1024 bp distal
Rr604192	regulatory region 604192	38 bp proximal
Rr604193	regulatory region 604193	1490 bp proximal
Tssr44447	transcription start site region 44447	1788 bp upstream
Tssr44448	transcription start site region 44448	1596 bp upstream
Tssr44449	transcription start site region 44449	1567 bp upstream