rs32659752 SNP Detail

Summary

• ID
  rs32659752
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150131859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTCTAC AGCATGAGTT
  CCAGGACAGC CAGGGCTATA CAGAGAAATC CTGTCTCGAA AAAAAAAAAA AAAAAGAAAG
  AAAGAAAGAA AGAAAAGAAA AGAAAAGAAA AGAAAAGAAA AGAAAAGAAA AGAAAAGGAA
  GGAAGAAAGA AAGACCTTAC TGAGGGCAGC CTCCAGAGCC CACCAGCCTC CTTTTACAGA
  K
  ACCCTGAAGC TCTTCAAAGA TTGGGCTCTT GCAGTGAGAG TGATGGTGTG GAATTCCTAC
  CCACCTTGCA ATGGCTGGGC CTGCCTGGTA GAGCTGTTCA TCTGTGCCTG CCATGGGCTC
  ACTCTAGGTC TCTTGAGACC TCCCAGATAC TACAAGTCTG GGGAAAGAGA ATGCACAGGC
  TCATGCCCAG ACATTTCCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46710990	NES11013188	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32659752					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46710990	NES11013188	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150131859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	697 bp proximal
Gm13067	predicted gene 13067	793 bp upstream
Gm69230	predicted gene, 69230	within coordinates
Rr377414	regulatory region 377414	927 bp upstream
Rr605155	regulatory region 605155	303 bp proximal
Rr605156	regulatory region 605156	1112 bp proximal
Rr605157	regulatory region 605157	1701 bp proximal
Tssr40363	transcription start site region 40363	789 bp upstream
Tssr40364	transcription start site region 40364	876 bp upstream
Tssr40365	transcription start site region 40365	1771 bp upstream