rs32659749 SNP Detail

Summary

• ID
  rs32659749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150130948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGAAGC CAGCAGGGAT
  GGAGCACCCA GATTGGAATG TTCCCATGGG TCTGTCCCTA TGGACAGAGA ATGAGGGTCC
  TTCAAGCTAG TGACATAGCC GGTGCTCCCC AGAGGCTCAG ATGAACAGGT GGTACACGGG
  AGTGTCTGCT GTGGGCTGGT ACTTAACTGC AGTCCTTAGG ACACACACGT AGGCAGAGCA
  Y
  GTATGTTCAT TCATTTTTCT TCCCACTGTG ACAAGGACCA AGTTTCACTT TTCTGGTCGT
  CACCAGTAAA TTAGAGAGGA CCAGGGTTTA TCTCAAAAGG ATTCTTTGAA AGTCTCCAGA
  GGGGTTTAAT ATGATACCTC GTGTTTGTTA CAAGAGACTG CATGGGTCAA AGGGGTGTGT
  GAGTGTGTGT GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46710987	NES11013189	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C	C	C	C	C
ss148045821	ENSMUSSNP5319797	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32659749					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46710987	NES11013189	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150130948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	1608 bp proximal
Gm13067	predicted gene 13067	1704 bp upstream
Gm69230	predicted gene, 69230	635 bp downstream
Rr377414	regulatory region 377414	1838 bp upstream
Rr605155	regulatory region 605155	1214 bp proximal
Tssr40363	transcription start site region 40363	1700 bp upstream
Tssr40364	transcription start site region 40364	1787 bp upstream