rs32658080 SNP Detail

Summary

• ID
  rs32658080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150134640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG AAAGCAGGCT TGAGCCGCAG
  Y
  CAGTAACCAA GAGAAAAGGT GACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46711023	NES11008642	PERLEGEN	MM_PANEL2	f	SNP	C			T	C	C	T	C	C	T		C	T	C	T		T
ss148045916	ENSMUSSNP2055935	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss321427750	CHEV_4_149424292	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32658080					SNP	C	C	C	T	C	C	T	C	C	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711023	NES11008642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150134640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	862 bp distal
Gm13067	predicted gene 13067	within coordinates
Gm69230	predicted gene, 69230	1070 bp upstream
Rr377414	regulatory region 377414	151 bp downstream
Rr605155	regulatory region 605155	1934 bp distal
Rr605156	regulatory region 605156	1169 bp distal
Rr605157	regulatory region 605157	580 bp distal
Rr605158	regulatory region 605158	1574 bp proximal
Tssr40363	transcription start site region 40363	1939 bp downstream
Tssr40364	transcription start site region 40364	1891 bp downstream
Tssr40365	transcription start site region 40365	992 bp downstream