rs32658074 SNP Detail

Summary

• ID
  rs32658074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150134500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGAGTGC CCCTGCTGGC
  AGGGGCTCTG CCTAGCCTGA AAGCTTTATT GTACTCCGTG TAGCAGGGGC CAACCCAGGT
  CCGTCCGAGT CCCGTCCCGT CCCCCCCCCC CCCCCCCCAA GGCAGCTCAA GGACAAGTTT
  ATTAGGATGT GAGAGAAAAC AACGTGTCAG GCAAGCAGCA CGTGTTGCCG AGGGCCCTGG
  R
  AAGAGGACAC GGGAGAGAAG AAGAGAAAGC CATGCCTTTT GCAATGGAGG TGGGCAAGCA
  GCTGTGTGGC AGGGGTGGAA GATTTCAGAG AAAGAGTGCA AGAAGGCCCA GGGTGCCAGA
  AAGCAGGCTT GAGCCGCAGT CAGTAACCAA GAGAAAAGGT GACCAAGAAA GAGGAGGTGT
  GAGTTGGGAC TCAGAAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46711017	NES11008640	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	G	G	G	G	G	G	G	G	G	G
ss148045909	ENSMUSSNP6954030	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32658074					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711017	NES11008640	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150134500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	722 bp distal
Gm13067	predicted gene 13067	within coordinates
Gm69230	predicted gene, 69230	930 bp upstream
Rr377414	regulatory region 377414	11 bp downstream
Rr605155	regulatory region 605155	1794 bp distal
Rr605156	regulatory region 605156	1029 bp distal
Rr605157	regulatory region 605157	440 bp distal
Rr605158	regulatory region 605158	1714 bp proximal
Tssr40363	transcription start site region 40363	1799 bp downstream
Tssr40364	transcription start site region 40364	1751 bp downstream
Tssr40365	transcription start site region 40365	852 bp downstream