rs32653909 SNP Detail

Summary

• ID
  rs32653909
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150062864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTTCTTC ATTCCCTTTT GCATGGCACA CCCCCGACTC
  TCTGTCAGAG TCAGAGAAAG AAGGCAAAAG AGCATGGGGG AGCTCAAGGC CTGTCAGGCT
  K
  CGGAGGAGGC CCTCCTGGGA GAGCGCTAAG ATATCAGTCC AAGTGGAAGG CAGCTCTGAT
  TCCACTAATT TGGGGAGCAA AAGTGAGAAG AGAGTATTTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46710207	NES11013465	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32653909					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46710207	NES11013465	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150062864 () rs orientation: forward

Symbol	Name	Function Class
H6pd	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	1068 bp downstream
Rr398875	regulatory region 398875	1600 bp upstream
Rr605129	regulatory region 605129	within coordinates
Rr605130	regulatory region 605130	494 bp proximal
Rr605131	regulatory region 605131	1266 bp proximal
Tssr44702	transcription start site region 44702	1909 bp upstream
Tssr44703	transcription start site region 44703	1633 bp upstream