rs32652839 SNP Detail

Summary

• ID
  rs32652839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81817397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGACATT TTCATGGAAA
  ATGACCTTGA ATGCCAATAA GTGATCCAGT TACTCAAGAT TGGACATCAA GATACTTATA
  TTTAAATTGC TTTTGTTCTG CAGAACAGGC TTGTCATTGC TTCATGAAAA GACTGTAAAC
  ATCATTCAAA GTCACAGTGC ATGAAAACAT TGTTATTCAT TTCCTCACTA TTTGCATACC
  Y
  AGTTCACTCT TGCTTATGTT GATATAGATG TTTTCTCAAT TCCACCTCAG GACCTCTGTG
  GATGAACTGC TGAGTGTTTT CCACAGCAGT TGGGACTGAT TCCAACTAAT CACATCCTAT
  GATCGCCGAC AGATCAGAAA CAAAATAAGA GACTGCTGCC TCAGTCTCTC TATGTCGTCT
  TGCTAAAAGA GGAGTGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46709707	NES10760594	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32652839					SNP	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46709707	NES10760594	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81817397 () rs orientation: forward

Symbol	Name	Function Class
Gm9989	predicted gene 9989	within coordinates
Rr375244	regulatory region 375244	within coordinates
Rr578719	regulatory region 578719	5 bp proximal