rs32652054 SNP Detail

Summary

• ID
  rs32652054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81816574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAAATGG AAACGAAGAT
  GTGGATAGTT TTGAAAGTGT CCATTCTTAC CATCCTTCCT AACACTATGA ACCCAAATGC
  TGAGATTCCA GCTGAACTTC CCCGAAGGAC CAGTGTTGTC CTCAATTACA GCCACAAAGT
  TCCATCCCTG TTCTATTCAG AAACCTCAGG TAGTGCAATA TGAGCTACAG GACAGCAGGA
  Y
  TGAGTCCCAG GTAATGATCA AAGGAGAACA AGAACAAATT CACACCTTTC GTTTTTAGGA
  CCCAAAAGCA CCAAATGTGA GTTCTATTCT TTGAACTAAA GAGATGGAGA ACCTTAATGG
  TTAAATGCGA GAAGTGGAGA CAGTCACTAG AAGGAAGTTT AACTTGAAAA ATTCAGTTCC
  ACTAAAAGCA AACAGAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46709689	NES10760575	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32652054					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46709689	NES10760575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81816574 () rs orientation: forward

Symbol	Name	Function Class
Gm9989	predicted gene 9989	within coordinates
Rr375244	regulatory region 375244	593 bp upstream
Rr578719	regulatory region 578719	828 bp proximal