rs32651615 SNP Detail

Summary

• ID
  rs32651615
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:81846447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTATGA TTCCTCCGAA
  TCTGGTAGTG GGGAGTTTTG AGAGTTGCTA GAGTTAAAAG AGGGAGGTGA AATTAGGGAA
  TGGCAGAACA TTTTGTTCTT TTGCAAGACA TCAGCCATGA TAAGTAGACT GTTCCTGGCA
  GAGTGCTAGA GGGCTGTGAA AGGCAGGAGT GATTGCAGGG GTGATAACAC TGACACTTGG
  M
  AGCCTGCAAC CAGTGTCTGG TTTAGCAAGT GAAAGAGACC ATCATTCACA GGAGCCATAC
  ATGGGCGGCT GCTGCAGGGG CCACTGTGAG ATCCATATCT TAGAGAAGGT CTGGCAATCA
  TCTTCTAATC GTTTACAATT AGGTCTACAA GTATTTAAAA TACTCTTGCT CTAACTACTT
  GGCAACCAAA TAGATTGATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45450075	mCV23519270	ABI	CRAMUS_MOUSE	f	SNP		A	A				C		C
ss46710070	NES10759845	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	C	A		A	C	C			A	A		A
ss135398840	ENSMUSSNP6828382	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						C			A
ss320817233	CHEV_3_81743062	CHEVERUD	SCREENING_POP	f	SNP											C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32651615					SNP	A	A	A	C	C	A	C	A	C	C	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46710070	NES10759845	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81846447 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctso	cathepsin O			Intron
				Noncoding-Transcript-Variant
Rr578733	regulatory region 578733			within coordinates