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rs32650549 SNP Detail
Summary
  • ID
    rs32650549
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:150061446 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GTGAGGCCAA GGACCACCCT GACAAACACC GTGTCTATGT
    ACACCTGCAT CCTGACACAT GTGGTGTCCG TGTACACCCA CACTCTCGGT GCAAACTCTC
    R
    GCTGTTCAAA TTGTCTCAAC AGCATCTAGC AAATACAAAC ATTGCCACTC AATAGAAAGG
    GACAGAAAAA GATGCATAGA GTTCGTTTAA AACACCAAGC                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46710159 NES11013449 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs32650549 SNP G G G G G G A G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46710159 NES11013449 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:150061446 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm69401 predicted gene, 69401 969 bp upstream
Rr605129 regulatory region 605129 793 bp proximal
Rr605130 regulatory region 605130 1912 bp proximal
Tssr44701 transcription start site region 44701 2000 bp upstream
Tssr44702 transcription start site region 44702 491 bp upstream
Tssr44703 transcription start site region 44703 215 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory