rs32650546 SNP Detail

Summary

• ID
  rs32650546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150061437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCCACA GAGGCACCCC
  TTCCCCCACA CCATACCTCG TCCCCACCAA ACATATCTCT GGTTTCTCTT TTTACAAAAC
  GCAACAATAA ACAGCTCCTC CAGACCTCTG TGAGGCCAAG GACCACCCTG ACAAACACCG
  TGTCTATGTA CACCTGCATC CTGACACATG TGGTGTCCGT GTACACCCAC ACTCTCGGTG
  Y
  AAACTCTCGG CTGTTCAAAT TGTCTCAACA GCATCTAGCA AATACAAACA TTGCCACTCA
  ATAGAAAGGG ACAGAAAAAG ATGCATAGAG TTCGTTTAAA ACACCAAGCC ATCAAAGCAA
  CGTAGGACTT TAACAAACTC ACCCTTGAGG TCAAAGAATG AACACAGGGG TCATTATTCA
  GAGGTCCTGT CCATGGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46710156	NES11013448	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32650546					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46710156	NES11013448	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150061437 () rs orientation: forward

Symbol	Name	Function Class
Gm69401	predicted gene, 69401	960 bp upstream
Rr605129	regulatory region 605129	802 bp proximal
Rr605130	regulatory region 605130	1921 bp proximal
Tssr44701	transcription start site region 44701	1991 bp upstream
Tssr44702	transcription start site region 44702	482 bp upstream
Tssr44703	transcription start site region 44703	206 bp upstream