rs32646238 SNP Detail

Summary

• ID
  rs32646238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171675688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGT TCTGTCCCTA TGAGGAAGGC
  R
  AAAACAAATA TTGGAAAATA GCTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45174326	mCV24401868	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss120003754	PARCsnp_1.15954	PARC_SEQ	INBRED	f	SNP			G	A
ss120006270	PARCsnp_1.05403	PARC_SEQ	INBRED	f	SNP			G	A
ss146176028	ENSMUSSNP1884210	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320121280	CHEV_1_173778252	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32646238					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171675688 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd84	CD84 antigen			Intron
				Noncoding-Transcript-Variant
Rr423404	regulatory region 423404			745 bp proximal
Rr423405	regulatory region 423405			1245 bp proximal
Tssr292	transcription start site region 292			1533 bp upstream
Tssr10109	transcription start site region 10109			61 bp downstream
Tssr10110	transcription start site region 10110			29 bp downstream
Tssr10111	transcription start site region 10111			262 bp upstream
Tssr10112	transcription start site region 10112			1707 bp upstream
Tssr15122	transcription start site region 15122			1391 bp downstream
Tssr15123	transcription start site region 15123			1409 bp downstream
Tssr15124	transcription start site region 15124			1421 bp downstream