rs32639141 SNP Detail

Summary

• ID
  rs32639141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:75943242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGGGAAACA CAGTGTTCTT TTCATCCAAA TGTTTTAATA ATAAAACCGG AGGGAGAATG
  AGACTGAAGT TGCTGGCCTG TGAAAGATAA TGGTGAGGTT TTGGATCGAG CAAGAGACAA
  TCTTCCTATC CAACAGCGGG GAGAGCAACT GGTTCAAGGG CAGCTTGGGG TACACAGTAA
  TACCTTGTCT CAAAACAAAC AAACAAACAA AGAAACAAAC AAACAGGAAT ATATAAAATA
  TGTCAAACAA ATTCAGTATT TACTTACAAC TTCATTGATT CATGTTCTTT CTCTCTTTCT
  Y
  TCTTTCTTTC TTTCTTTCTT TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTTTC ATTTGTTTGT TTGTTTGTTT GTTTTTCAAG ACAGGGTTTC TCTGTATAGT
  CCTGGCTGTC TTGGAACTCA CTCTGTAGAC CAGGCTGGCC TCGAACTCAG AAATCCACCT
  GCCTCTGCCT CCCAAGTGCT GGGATTAAAG GCGTGCGCCA CCACGCCCTG CCTATGTTCT
  TTCTACTAAT AAAAATTCCC TACTTTGGGG CTAGAGAGCA GCATCAGTTG CTAAGAGTAC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45674045	mCV24419792	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss146576037	ENSMUSSNP5412898	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32639141					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:75943242 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594066	regulatory region 594066			344 bp distal
Rr594067	regulatory region 594067			654 bp proximal