rs32633954 SNP Detail

Summary

• ID
  rs32633954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:4025915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGTGTGA GGGCAGACAA
  CTTGGCAGTC CTCAGCCTGC TAGCTGGCAT AACGCTTTCC CCGAATCTTC ACCCTGGAGC
  TTGTTTTTAC TCCGGATTGA TCTTGGCTAG CTCACACTTA AAGTACCTTA AATGTCTTGC
  GACCTAAACG TGGCAGCGAC CTCACTGTCT TAGTTCACCT TGAGACCTTC CTGACAAGTG
  Y
  TAAGTGTTCT TCCGGGTCTT AATCAGCACT CAAGTGGTCA AATTGCTTTG CATTCCATGA
  ATGCTAATTC TTGCCTATGG CCACGGAAAT CTAATGCTGT TTTGGCTTTT TGTTTGTTCG
  TTTGTTTCCC CCGGTTTGGC ACAATATATT TTGAATAACT CTACCCTTCA TCTTAATTTT
  AAGGTTTTTG TTGTAGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49379123	NES12542501	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32633954					SNP	T	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49379123	NES12542501	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4025915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	140 bp distal
Gm2093	predicted gene 2093	within coordinates
Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	689 bp upstream
Rr369897	regulatory region 369897	within coordinates
Rr498628	regulatory region 498628	700 bp distal
Rr498629	regulatory region 498629	386 bp distal
Rr498630	regulatory region 498630	within coordinates
Tssr133595	transcription start site region 133595	1188 bp upstream
Tssr133596	transcription start site region 133596	673 bp upstream