rs32633369 SNP Detail

Summary

• ID
  rs32633369
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155833421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGACCTGAG AGCCAAACCT GGGATTCCTG CTGATTCGGG
  ATCACTGTAG AGGGCGGGGT GGTCCGTGAG GAGGATGTTA TGTTACGCAT CTCCAGGACT
  S
  CGGCTCAATC ACAAACTTCC CAAACTTAGA GGGAAAAGCA ACTAAACTGC AGCCTCGGCC
  TGTGCATCAT GAAGGCCTCG CCTTTCTGTG CTCTAGGTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45673249	mCV22758148	ABI	CRAMUS_MOUSE	f	SNP		G					C		G
ss46783632	NES10998276	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G		C	G	C	C		C	C	C		C
ss148115229	ENSMUSSNP1995764	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss321442768	CHEV_4_155123073	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32633369					SNP	G	G	G	G	C	G	C	C	G	C	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783632	NES10998276	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155833421 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atad3a	ATPase family, AAA domain containing 3A			Intron
				Noncoding-Transcript-Variant
Rr606559	regulatory region 606559			441 bp proximal
Rr606560	regulatory region 606560			562 bp proximal