rs32627367 SNP Detail

Summary

• ID
  rs32627367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152630674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCTCTA GAGACATTCT
  CTTTGCAACC AGCCCTCCGT CATGGCAGGC ACCCGACCCC TTGTTCTGTT CCCCTGGGCC
  GGCAGCCTCC CAAGTCTTCA CTCCCGGGGA AGGTGCCCTC ATGGCTGTAG GAAGAGTCAG
  GGGTTACAGA AGCTTCGACC TCAGTCTGGT TCCCTCGTCC TGCCGGGTAG GGGGAAGCTC
  Y
  GGGACACGGA GTTGATGAGG TCCAACCTGG CCTGGAGCCT GCGATTCCAT CACTAGTCCC
  CCAGCCTGGC CTGGGCTCAG GCAGAAGCCT GAGATTGACA GCTGGAGAGA CTTGCTCAAG
  AGAGGCCCCC CACCCCTGGG CTGTCCTGGG GGCCTTCGTG CAGTCTCTGT TCACCTGCCT
  CACCTGGCAC AAGGACTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45672431	mCV23363087	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148083523	ENSMUSSNP4858116	ENSEMBL	ENSEMBL_Sanger	f	SNP				T
ss321435165	CHEV_4_151920326	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32627367					SNP	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152630674 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
Rr605903	regulatory region 605903			377 bp proximal
Rr605904	regulatory region 605904			463 bp proximal
Rr605905	regulatory region 605905			1570 bp proximal