rs32623999 SNP Detail

Summary

• ID
  rs32623999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139340748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAA GAGCAGTGAG TGCTCTTCAC
  R
  GTCTAGCCTT CTCTCCAGCC CTTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45672018	mCV22729062	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss147675969	ENSMUSSNP878460	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss321382809	CHEV_4_139169352	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32623999					SNP	A	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139340748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15172	CpG island 15172	1395 bp proximal
Gm21969	predicted gene 21969	Intron
Iffo2	intermediate filament family orphan 2	Intron
Rr603258	regulatory region 603258	1320 bp distal
Rr603259	regulatory region 603259	1534 bp distal
Rr603260	regulatory region 603260	1148 bp proximal