rs32623221 SNP Detail

Summary

• ID
  rs32623221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149682442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTGGTT AGGACTGGGA
  ATGCAGAACA TGGGTGAGCT CAGTTGCTCT CTCTGATATT GGCTCAGTGT GACCAGACCT
  CTGGCAGTTC AAGTCCCCTA CGGACATTGT CTCATCCTGT GTCTTCTCAA GGAGGAGACT
  GGGCACTATG CAGAGGGAAA ACGTCACAGT ACAGGGTCCT GGCTCTGAGC CTGACATGAA
  R
  CAATGGCAGA GAGATCCTGA AGACTCCGCC CCTCAGCGTG GATGAGTGAC TGCCTCCTGC
  TTGAGGGATT CTCAACCCTG GTAGGTGGAG CAGAGCCAGG GACAGTGTGA AGGCAAGCTT
  CACTCTTGGG CTGGGCACGT GTGGCGCAGG CTTAATAGGT GGCTTCGAGA GACAGTCTGA
  GTTTGCGTTT CAAGTTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46705899	NES11011347	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32623221					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46705899	NES11011347	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149682442 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clstn1	calsyntenin 1			Intron
				Noncoding-Transcript-Variant
Rr604981	regulatory region 604981			within coordinates