rs32623216 SNP Detail

Summary

• ID
  rs32623216
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149681677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGGCATG CATACTGCCA
  TCAGGCTATC CCCAGCCCTG GACAGTGTCA TGTCGCTCCA CTTCTGGGGC CTTTAGTAAC
  AAGAGCTACA GTATCAATAT TTGTTTCAGT GAGATGTTTT AGAGGCCACT CAAGGCCAGT
  GATACATAGT TGCTTATCTA ACTGATTGAG TTTACTGACT GTGTTAAAAA AAAAAAAAAG
  S
  TATCCTGACT CTTCTTAAAA GTATTTTTTG CTACTTTAAA CAAACAAACA AACAAAAAAT
  ACAAGTGGGG CTAGACAGGT GGCTCTGTAG GCAGATGGCT CAGTGGTTAA GAGCATTTGT
  TGTTCTTGTA TATAACTCTG GTTCGATTCC CAACACCCAC AGATGCTCAC AACTCACTGT
  AACTCTAGGG GTCTGATGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46705893	NES11011368	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	C	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32623216					SNP	G	G	G	G	G	C	G	C	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46705893	NES11011368	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149681677 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clstn1	calsyntenin 1			Intron
				Noncoding-Transcript-Variant
Rr604980	regulatory region 604980			1767 bp distal
Rr604981	regulatory region 604981			651 bp proximal