rs32621063 SNP Detail

Summary

• ID
  rs32621063
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:75943250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACAGTGTTC TTTTCATCCA AATGTTTTAA TAATAAAACC GGAGGGAGAA TGAGACTGAA
  GTTGCTGGCC TGTGAAAGAT AATGGTGAGG TTTTGGATCG AGCAAGAGAC AATCTTCCTA
  TCCAACAGCG GGGAGAGCAA CTGGTTCAAG GGCAGCTTGG GGTACACAGT AATACCTTGT
  CTCAAAACAA ACAAACAAAC AAAGAAACAA ACAAACAGGA ATATATAAAA TATGTCAAAC
  AAATTCAGTA TTTACTTACA ACTTCATTGA TTCATGTTCT TTCTCTCTTT CTTTCTTTCT
  Y
  TCTTTCTTTC TTTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTT
  TCATTTGTTT GTTTGTTTGT TTGTTTTTCA AGACAGGGTT TCTCTGTATA GTCCTGGCTG
  TCTTGGAACT CACTCTGTAG ACCAGGCTGG CCTCGAACTC AGAAATCCAC CTGCCTCTGC
  CTCCCAAGTG CTGGGATTAA AGGCGTGCGC CACCACGCCC TGCCTATGTT CTTTCTACTA
  ATAAAAATTC CCTACTTTGG GGCTAGAGAG CAGCATCAGT TGCTAAGAGT ACTTGTTCTT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45671351	mCV24419781	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss146576041	ENSMUSSNP1441206	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32621063					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:75943250 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594066	regulatory region 594066			352 bp distal
Rr594067	regulatory region 594067			646 bp proximal