rs32620853 SNP Detail

Summary

• ID
  rs32620853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:4464715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAGGGA AAGGCTTATT
  TACATTCCTC AGACCATAGG CCACTTCCAG ACAAGGCAAG TCCTTGTCAC CTCATTCCCT
  AAAGACCAGT TTAAAAGTCA CACTCTTCTG CCAATCACAT TGTGCCTAAT GGCTGCAGCT
  CTGAAAATTG TATAAAAGCT TGCCAAACGG GCTGTGAGGG GTGGTTCTCT CTCCTTTGTG
  Y
  ACAGAGTGAC CCACCATGCT GGAAAAATAA AATTCCTCTT GCTTTTGCAT CAATCCCCAA
  ATCCGAGTTG TTCACTCAAG GAGTCTCCTC CCTGAGTTAA GTTACTTTCT GGTAAGTTAA
  GGCTCAACAG AGTCTTACAA TAGCAATAAG AGACAAAACA TTTCATTCTT GAAGATGGGG
  CACTGGCAGA GAAAACCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45671712	mCV27569884	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss145948746	ENSMUSSNP3698072	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs32620853					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:4464715 () rs orientation: forward

Symbol	Name	Function Class
Rr588287	regulatory region 588287	within coordinates
Tssr40838	transcription start site region 40838	586 bp upstream