rs32620356 SNP Detail

Summary

• ID
  rs32620356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149653920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG TTAGATGCTA ATGATCTGCA
  Y
  GCGCCAGCCT CGGGACGCCA GCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46705671	NES11011560	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	C	T	C	T	C		T	T	T	C		T
ss148036243	ENSMUSSNP5131885	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321426237	CHEV_4_148943572	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32620356					SNP	T	T	T	C	T	C	C	T	C	T	C	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46705671	NES11011560	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149653920 () rs orientation: forward

Symbol	Name	Function Class
Gm13066	predicted gene 13066	1673 bp upstream
Gm68087	predicted gene, 68087	1445 bp downstream
Gm70645	predicted gene, 70645	within coordinates
Rr604967	regulatory region 604967	1799 bp distal
Rr604968	regulatory region 604968	1684 bp distal
Rr604969	regulatory region 604969	1269 bp distal
Rr604970	regulatory region 604970	462 bp distal
Rr604971	regulatory region 604971	31 bp proximal
Rr604972	regulatory region 604972	1621 bp proximal
Tssr44662	transcription start site region 44662	1827 bp downstream