rs32618230 SNP Detail

Summary

• ID
  rs32618230
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149652289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTCTAAC TCAGGAGTCT
  GTAAAAGGAA GTAGGTCACT TAAGAAGAGG CAGGTCACTT GAGCAATTGA AGCAAAAGGG
  TCTCCCAGGG CCTCTGGCCC TGCAGCAGGC ACCCTCAGGG CGCTGCCTTC CTAGGCACAG
  ATGCGCGTTG CTGCTGATAA TGAGCTCAGA GGCAGGACTG GGATGAAGAT GGGATGTGGA
  S
  GGTACACAGC CTGCAGGGGC CTAGGGACCT GGAGGGCAGG GAGGCAGAAC ACCCTGTCCT
  TTGTTGGTGT CTCCCCTCCC GTTCCCAGAG TCGGATGCAA TTGAGAGTGG ATTAAGTGGT
  TCTCAATCCC TATAGGTAAG TAGCAGCTGT GGGCTTCCAG GCTGCCCTCA GCCTTTGAAC
  AGGGTCCTTT GTCTCAGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45725375	mCV24218223	ABI	CRAMUS_MOUSE	f	SNP	C	G					G		G
ss46705644	NES11011580	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	G		G	G	G	G	G	G	G	C
ss148036184	ENSMUSSNP3917578	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32618230					SNP	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46705644	NES11011580	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149652289 () rs orientation: forward

Symbol	Name	Function Class
Ctnnbip1	catenin beta interacting protein 1	1395 bp downstream
Gm13066	predicted gene 13066	42 bp upstream
Gm70645	predicted gene, 70645	within coordinates
Rr604967	regulatory region 604967	168 bp distal
Rr604968	regulatory region 604968	53 bp distal
Rr604969	regulatory region 604969	within coordinates
Rr604970	regulatory region 604970	762 bp proximal
Rr604971	regulatory region 604971	1662 bp proximal