rs32616774 SNP Detail

Summary

• ID
  rs32616774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149650166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG TGGTCGTCCC ATGCCCACCA
  Y
  GCCTTCCCTG GGAGTGAGAG AAACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss46705617	NES11011597	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C	T	C	T		T
ss148036167	ENSMUSSNP7128932	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321426223	CHEV_4_148939818	CHEVERUD	SCREENING_POP	f	SNP											T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs32616774					SNP	C	C	C	T	C	T	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46705617	NES11011597	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149650166 () rs orientation: forward

Symbol	Name	Function Class
Ctnnbip1	catenin beta interacting protein 1	mRNA-UTR
Gm13066	predicted gene 13066	within coordinates
Gm70645	predicted gene, 70645	1945 bp upstream
Rr604966	regulatory region 604966	137 bp distal
Rr604967	regulatory region 604967	1594 bp proximal
Rr604968	regulatory region 604968	1956 bp proximal