rs32613220 SNP Detail

Summary

• ID
  rs32613220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135665980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTTAT ACATGAATAC
  TGTAGCTGTC TTCAGACACA CACCAGATCC CATTACAGAT GGTTGTGAGC CACCGTGTGG
  TTGCTGGGAA TTGAACTCAG GACTTCTAGA AGAGCAGTCA GTGCTCTCAA CTACTGAGCC
  ATCTCTCCAG CCTCATGGCT ATGTTTTTGT AACTCCTCTC TCCACCTATG GTCCCAAGCC
  Y
  GGGTACCAAA ATCCCACCTA CCTCTCCTCT GCCCAGTTAT AAGCTGTTGG CATCTCTAGT
  CAACCAATAG TTTTAAATTA AGGAACAAGG TCACATAGCA TTACTTTATC TGTACAGATT
  CTCTCATCCC TGGAGGCAAC CAGGCCTTGG GGGCCAGTAT TTAGCATCAC AGTACATAGC
  AAAAGACCAA ACCTCCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45670161	mCV22566163	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss147554399	ENSMUSSNP5862325	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321353528	CHEV_4_135494584	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32613220					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135665980 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fuca1	fucosidase, alpha-L- 1, tissue			Intron
				Noncoding-Transcript-Variant
Rr602205	regulatory region 602205			446 bp proximal
Rr602206	regulatory region 602206			480 bp proximal