rs32606299 SNP Detail

Summary

• ID
  rs32606299
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108693293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATC CTCCTGCCTC TGCCTCCCGA
  K
  TGCTGGGATT AAAGGCGTGC GCCAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45670019	mCV23912966	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss147191137	ENSMUSSNP1627867	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
ss321252874	CHEV_4_108508701	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32606299					SNP	T	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108693293 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr376990	regulatory region 376990			1029 bp downstream
Rr597225	regulatory region 597225			1992 bp distal
Rr597226	regulatory region 597226			1485 bp distal
Rr597227	regulatory region 597227			1873 bp proximal
Tssr38313	transcription start site region 38313			1479 bp downstream
Tssr38314	transcription start site region 38314			1391 bp downstream
Tssr38315	transcription start site region 38315			1345 bp downstream
Tssr38316	transcription start site region 38316			1289 bp downstream
Tssr42740	transcription start site region 42740			1842 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)			Intron
				Noncoding-Transcript-Variant