rs32602241 SNP Detail

Summary

• ID
  rs32602241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139342439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAT GGTGGGTGGG GGCTTTACAG
  R
  GAGACATTCG GGGCTGCCTC GTGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45669508	mCV22729272	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss147676019	ENSMUSSNP1150926	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss321382819	CHEV_4_139171043	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32602241					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139342439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm21969	predicted gene 21969			Intron
Iffo2	intermediate filament family orphan 2			Coding-Synonymous
				Intron
Rr398637	regulatory region 398637			1550 bp upstream
Rr603260	regulatory region 603260			522 bp distal
Rr603261	regulatory region 603261			950 bp proximal