rs32599278 SNP Detail

Summary

• ID
  rs32599278
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149410768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGACACA TTACAAAAGG
  GCATCGGATC CCATTATAGA TGGTTGTGAG CCATCATGAG TTGAACTCAG GACCTCTGGA
  AGAGCAGCCA GTGCTCTTAA CCACTGAGCC ATCTCTTCAG TCCGACAATC TTCCTTCTAA
  ACCAGACTTA TTTTTGAAAT ATTCTGGATC CCATCACCTC TAATTAGCAG GCTGGAGGCA
  M
  ACAATAAATT TCCACGAAAC AGCTACTCTA AGAATCAAAG AAAAATTCAA ACCACGCCCC
  TAGAGGCAAA GAGATTGGCT GCATCCTTGC CCCACCCTCT TTCCATAAGT CCACTCTTGA
  AACCCTTCAA TTCTGAAAAT CCCACGGGAA GCAGCAGCTG TCCACTGACG GGACAGAAAC
  AGCACCTCTT AGGGATGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46702578	NES10938341	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32599278					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702578	NES10938341	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149410768 () rs orientation: forward

Symbol	Name	Function Class
Rr604886	regulatory region 604886	1606 bp distal
Rr604887	regulatory region 604887	1410 bp distal
Rr604888	regulatory region 604888	1177 bp distal
Rr604889	regulatory region 604889	658 bp distal
Rr604890	regulatory region 604890	171 bp distal
Rr604891	regulatory region 604891	916 bp proximal