rs32599122 SNP Detail

Summary

• ID
  rs32599122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43960562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC CCCTGCTCTA AGAAATTTAT
  Y
  TCAAAAGTTC TTTAAAGACA GATAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45668529	mCV24933982	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss146245034	ENSMUSSNP3974375	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321099586	CHEV_4_43973434	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32599122					SNP	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43960562 () rs orientation: forward

Symbol	Name	Function Class
Glipr2	GLI pathogenesis-related 2	Intron
Gm30377	predicted gene, 30377	within coordinates
Rr398233	regulatory region 398233	731 bp downstream
Rr591114	regulatory region 591114	1737 bp distal
Rr591115	regulatory region 591115	765 bp distal
Rr591116	regulatory region 591116	264 bp distal