rs32598516 SNP Detail

Summary

• ID
  rs32598516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149410175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAGCTT CTGAAAGGGC
  TAGAGCTCTG GCAGCACATG CTCCTCTTAC AGAGAACCTT GGTGCCATAT CCAATACCCA
  GCTCACAAAC ACCGTAATTC CAGTTCCAGG GCACCCAACG CCCTCTTCTG ACTCATATGT
  GCACTGCACA CATGTGGTGC AGGCAGTACC CATATATATA AAATAAAAGC AGATGCATCT
  Y
  TTAAAAAAAC TTAGACCATG CCTAGGTCAC ACCAAAGGCA CAACTGAAAC AGCTGGCAAC
  TCACCGTTCA ATGTGCCAAG TGCAAAGCAA ACCGCGTAAG ACACTCATGG TTCAAAGGCT
  GTTCTAAAGG CCAGGGATGT TGCCTAGTTG GATGTCAAGT GCCGGCCTAG CATGTACGTG
  TCCTGAGTTG GACCTTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46702566	NES10938418	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32598516					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702566	NES10938418	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149410175 () rs orientation: forward

Symbol	Name	Function Class
Rr604885	regulatory region 604885	1443 bp distal
Rr604886	regulatory region 604886	1013 bp distal
Rr604887	regulatory region 604887	817 bp distal
Rr604888	regulatory region 604888	584 bp distal
Rr604889	regulatory region 604889	65 bp distal
Rr604890	regulatory region 604890	within coordinates
Rr604891	regulatory region 604891	1509 bp proximal
Tssr40322	transcription start site region 40322	1741 bp downstream
Tssr40323	transcription start site region 40323	1726 bp downstream