rs32597877 SNP Detail

Summary

• ID
  rs32597877
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119669094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTAGTGG CCTCCAAGGG AGCTGCTACC TACCCTGCCT
  GCTCCTCCTC ATTTTTAGTT CCTACTTATA TCAGGAACAA AATTCCCAAT TTGCAAAGAA
  S
  CTCTGAAAAA GCTTCCGTTT CTAGCCATTC TGTCTTTAGT GAGCTGGTCT TGCTCCCCAT
  GACCTGATCT GTCTCTGCAT TTCTTTATAC CCATAAACG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45668816	mCV23157360	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss147336377	ENSMUSSNP699469	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32597877					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119669094 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398435	regulatory region 398435			945 bp upstream
Rr398436	regulatory region 398436			1503 bp upstream
Rr598655	regulatory region 598655			776 bp proximal
Tssr38753	transcription start site region 38753			1159 bp upstream