rs32597673 SNP Detail

Summary

• ID
  rs32597673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149410003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACCGTCT CCTAACTCTG
  GCTGTTGAGG ATTAAACGAG TTATGACTAC ACGTAAGAGT GATCGCACCC TGAACATATT
  CAAGAAATGG GAATCACTAA CCATCTGTCC CAGATGAGTT CCTATAGCCT AAGGCTGGCT
  CACACAATAC TGTGCTCATG TTTCCACAAT GAAAAAAAGC TTCTGAAAGG GCTAGAGCTC
  Y
  GGCAGCACAT GCTCCTCTTA CAGAGAACCT TGGTGCCATA TCCAATACCC AGCTCACAAA
  CACCGTAATT CCAGTTCCAG GGCACCCAAC GCCCTCTTCT GACTCATATG TGCACTGCAC
  ACATGTGGTG CAGGCAGTAC CCATATATAT AAAATAAAAG CAGATGCATC TTTTAAAAAA
  ACTTAGACCA TGCCTAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46702563	NES10938442	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32597673					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702563	NES10938442	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149410003 () rs orientation: forward

Symbol	Name	Function Class
Rr604885	regulatory region 604885	1271 bp distal
Rr604886	regulatory region 604886	841 bp distal
Rr604887	regulatory region 604887	645 bp distal
Rr604888	regulatory region 604888	412 bp distal
Rr604889	regulatory region 604889	86 bp proximal
Rr604890	regulatory region 604890	86 bp proximal
Rr604891	regulatory region 604891	1681 bp proximal
Tssr40322	transcription start site region 40322	1569 bp downstream
Tssr40323	transcription start site region 40323	1554 bp downstream