rs32596990 SNP Detail

Summary

• ID
  rs32596990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149408832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGACCCT GAACACCAAG
  TCAGGTGGGT GGCACCACCC ATGGTTCCAT CTCAGGATAG GAAAAGCTTC GTGTTAAGAC
  CGCGTGTGGC TGTAAAGAAT AAAGCAGAGG AGATGGAGAG GTAGCTCAGA GGCTAAGAAT
  GCTTATTGCT AGTAGTATTA AGAATCTGGG GGTCTGTATG AAGCATCTCT GAGTATTTTT
  Y
  GTCAACCCAG AGCCTGGCTC ACTCAGCCGC CTTGACCCTG TAAAGCACAT GATGTTTCTT
  AACCTTTGAG CATCTCTTAG CCCTTCTTAA GATTTTTCCA CAGGCAATGA GAAGTAGTCA
  AGTGGTTGAC CTGGGCTACA TAGTGAGTTC CAGGCCAGCT TGTGCTATAG AGTAAAACTC
  TATCTCAAAA ACAAACAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46702548	NES10938495	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32596990					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702548	NES10938495	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149408832 () rs orientation: forward

Symbol	Name	Function Class
Rr604885	regulatory region 604885	100 bp distal
Rr604886	regulatory region 604886	309 bp proximal
Rr604887	regulatory region 604887	505 bp proximal
Rr604888	regulatory region 604888	738 bp proximal
Rr604889	regulatory region 604889	1257 bp proximal
Rr604890	regulatory region 604890	1257 bp proximal
Tssr40322	transcription start site region 40322	398 bp downstream
Tssr40323	transcription start site region 40323	383 bp downstream