rs32596422 SNP Detail

Summary

• ID
  rs32596422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149390610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCA ATATCCACTA TAATATCACT
  Y
  TTAAACAGTT ATTCAAAGCT GAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45684406	mCV24953720	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss46702473	NES10939185	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	C	T	C	T	T	T	T
ss148031022	ENSMUSSNP3536363	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32596422					SNP	C	C	T	T	T	C	T	T	C	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702473	NES10939185	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149390610 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15323	CpG island 15323	564 bp proximal
Kif1b	kinesin family member 1B	Intron
Rr398866	regulatory region 398866	1522 bp upstream
Rr604876	regulatory region 604876	within coordinates
Rr604877	regulatory region 604877	1156 bp proximal
Rr604878	regulatory region 604878	1343 bp proximal
Rr604879	regulatory region 604879	1755 bp proximal
Tssr44642	transcription start site region 44642	1532 bp downstream
Tssr44643	transcription start site region 44643	1561 bp downstream