rs32594059 SNP Detail

Summary

• ID
  rs32594059
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152371663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGACTGCG GGGAGTGGGA
  GCCACCTGCA GCGCGACTGG GGGCCCAGAT GGCCGGGAGG CAAGGGTTGA GAACAGAGGT
  CGCCTGTGGG TTGGCGCTGT CCGTGGTGCT GCCTTCCCTG CGCTGGAGCA GCAAGGGGCA
  GCGCAGGCCG CTGTCTCCCT CTCCGGGCCG AAGCCTCTGG CTCACGCCAC GCAAGCCGCC
  W
  TGGAAGCCGG ACGGGTAGTC CACCCCACTG GGTACTGGCC AGAGTCCTGG AGGAAGGAAG
  GGAGGGGAGA AGGGAGTGGA AGGGAAGAGA TGTGGAGGAA AGAAAAGGGA GAGAAGCATA
  AAGACAAGAA ATAAGATGCT CTCCTCAGTG GGGCAGACCC ACTCACACTG CGCCTGCAAG
  CCCACGGCCA GACAGACCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45668236	mCV23461126	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T	T
ss148080332	ENSMUSSNP2524862	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		T
ss321434071	CHEV_4_151661315	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32594059					SNP	A	A	T	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152371663 () rs orientation: forward

Symbol	Name	Function Class
Gpr153	G protein-coupled receptor 153	1869 bp downstream
Hes3	hes family bHLH transcription factor 3	Coding-NonSynonymous
Rr398899	regulatory region 398899	1902 bp upstream
Rr605827	regulatory region 605827	1490 bp distal
Rr605828	regulatory region 605828	1389 bp proximal
Tssr44825	transcription start site region 44825	864 bp downstream