rs32592772 SNP Detail

Summary

• ID
  rs32592772
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141231406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCATGAA CCACCTTTTC
  TAAAAAACAA ACAAACAAGA AACTCCGGAT GTCGCTCTGC AGCTCAGGCT TGAGTGAGAG
  CCTCCTTCCT TAGGCCCTTG AGTACAACAA CCCAGGTGCC AGCCACTATA CCCAGCAAAA
  ACGTAGGCTA TTTCATTTCA AACGAAATCC CAACTGGGTA CACCTGAGGC AGCCTGTGTC
  M
  ATGCCTAAGC CAATATACTT TGAGGTTTTG TCCTTCCCAA ATGTAACTTT ACGCTAACTC
  TCCGTCCTGT CCAGGACACG AGAGAAGCCC GCTCGTGCCT ACTTCGGAAC ATTCTTTGGA
  AGTCTCCCCG GGCCCAAGAG GTCTGAAAGG CACTCAGCTA CCCAGAGGCA GCTTAGCTTT
  ACAACTTGGG GACACTGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45667652	mCV22902681	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss147739594	ENSMUSSNP397034	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32592772					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141231406 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			464 bp proximal
Rr603781	regulatory region 603781			1837 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant