rs32590636 SNP Detail

Summary

• ID
  rs32590636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149391046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAATCTC TGCACGAAGA
  GATACTATGC AAATCTATGC ACGCCATGCA ATACGCCAAG AGCCTCCAAT ATGGTAAAGT
  GGCCTTAAAC ATCAACAGGC CTTCGAGGGC CAAAGCAGCG GTGGATTGCG ATGATAAGGA
  CAGAAACACA GAATTTCACC CCAACAAGAA TGGAATCTTC AAGCCAGTTT ACCCTGAAGG
  Y
  TCATATAGCA ATTCACCAAA GAGAAAAAGT GATTTGGGAG CTCAATTTTG CATTTCCAGT
  CGGTGAGGGT TTGCGTTGCA TGAACAATGA CTAGCTTGCT CTGAGTGGCC TCCCAACCCC
  CACAACTTGG CTTCTGGTGC GGCCAGTCAC CCTGAAAGCT GCCAGGGCTG TCACTCGGTG
  CCTACCAGCA ACCGGACTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45668015	mCV24953733	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss148031042	ENSMUSSNP4303804	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32590636					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149391046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15323	CpG island 15323	128 bp proximal
Kif1b	kinesin family member 1B	Intron
Rr398866	regulatory region 398866	1086 bp upstream
Rr604876	regulatory region 604876	within coordinates
Rr604877	regulatory region 604877	720 bp proximal
Rr604878	regulatory region 604878	907 bp proximal
Rr604879	regulatory region 604879	1319 bp proximal
Tssr44642	transcription start site region 44642	1096 bp downstream
Tssr44643	transcription start site region 44643	1125 bp downstream