rs32583764 SNP Detail

Summary

• ID
  rs32583764
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129994661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTTGGA AAACCCACTT
  CTACTCTCGG CTCAGACTGT GAGGCAAACT GCTGAGGGGT CCCTGTGACC AGGAGTCTGT
  TGGCTCAAGT AGAAAGAAAG AGAAGCAAGG ACCAGCTGTT GAATGGAGCA GGTTGGCTCT
  CAAGGCCAGA GGGGGAGACT GGCATGGGAG ACATCAAAGG CACACACCCT TTGAGCTGGG
  R
  CATCGACCCT TGGAAATGGT GCCTTCCTTC ATTTCCCTCC TCGGTCAAAT CCATGCTGCC
  CTCTGGGGGA TTCTATGACA GGCTAGGTTG AAGCTTTCAA GATTTGAGTG GCTGTCTCCC
  TGGAATTTGA AATGGCTGTA TTTTCTTGGA CCATGAAGAA CCAGATGGGA AGCTGAGTTT
  TATAGTCTCT TCTTCTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45666345	mCV22590780	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147459879	ENSMUSSNP3602553	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32583764					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129994661 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1591 bp downstream
Rr600438	regulatory region 600438	231 bp proximal
Rr600439	regulatory region 600439	1200 bp proximal
Rr600440	regulatory region 600440	1701 bp proximal