rs32578085 SNP Detail

Summary

• ID
  rs32578085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149132243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCACAGAG CCAAAGTGCC
  CCCTAGCAGG AGCCAGTGGC GACGCAGGCC AGAGGTGGCC GCTCACACAG CTAACAGAGG
  TGGCTAACTC ACACAGCCCA AATTAAGTGT TTTCACTCTG GGAAAATGAA ATGTTTTGCA
  AGATGAAACA GAATGAAAAT TGAGGTTTTA GGTAATTACT AGTTGGCATT TACATATCAC
  R
  GGCTGGTTCA ACACCTATTC ATTTTCCTCT TTTATTTAAA AAATTGCTCA TTAAAAATGA
  ACAGATGACA GTGACAGGGT TTTAGGACTT TTTTTTTTAA TTCTTTCTCC TTCTCTAAGG
  GGTACAAAAT CGAGAGGTAC ATTTTAGCCC ATTTATCTAC AAATTAGCAC ACAAGCGTGC
  ACATGCAAGC ATGGGTGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	WSB/EiJ
ss46699551	NES10947746	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	WSB/EiJ
rs32578085					SNP	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46699551	NES10947746	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149132243 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pex14	peroxisomal biogenesis factor 14			Intron
				Noncoding-Transcript-Variant
Rr604817	regulatory region 604817			1489 bp distal
Rr604818	regulatory region 604818			69 bp distal
Rr604819	regulatory region 604819			167 bp distal
Rr604820	regulatory region 604820			1009 bp proximal