rs32575253 SNP Detail

Summary

• ID
  rs32575253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149067941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGGGAA AAAGCTAACA
  CTTCTAGACA AGTAAAATGA AGACAATTTT AGAAAAGATA TTTTGAAAGA CAATAGGGCC
  TGTGCTGAGT TATGTAAAAA GAAACCAACA TAAGCTATTT TCCATAAGCT TTGGAGATAA
  TTCTAACTTT TTAGACTCTC CAGGTGACTT GAAGAAGAGG TGATGGTCTT GTCTGGATGG
  Y
  TGCATCGCAC TGTGTCTGTT ACCGCAGCAA CCTCCATTTA AAACAACAAA CTCCCCTGCA
  TCAGGATTCC ATGTGATCAT TAAGGCACCT TTGTATTTAA TCTGAAATTC CCTTAGAATC
  TGTCACTCCA TGAATATACA CGGTGGAGTC AGAGCAAGGG AGCCACGGTT GACCTGAATC
  TGAGTAGTCA GGTTACCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46699011	NES10929636	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32575253					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46699011	NES10929636	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149067941 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pex14	peroxisomal biogenesis factor 14			Intron
				Noncoding-Transcript-Variant
Rr1858	regulatory region 1858			1250 bp upstream
Rr604813	regulatory region 604813			960 bp distal
Rr604814	regulatory region 604814			1252 bp proximal
Rr604815	regulatory region 604815			1412 bp proximal